Pumpkin Cream Cheese Muffins Recipe
If you love the cozy flavors of fall wrapped up in a soft, tender bite, these Pumpkin Cream Cheese Muffins will quickly become one of your all-time favorites. They marry moist pumpkin-spiced cake with a luscious cream cheese swirl that melts into every forkful, creating a beautiful marbled effect that’s as delightful to look at as it is to eat. Whether you’re baking for a weekend brunch, a holiday gathering, or just because you crave some seasonal comfort, these muffins hit all the right notes—warm spices, rich creaminess, and a tender crumb that simply can’t be beat.

Ingredients You’ll Need
The magic of these Pumpkin Cream Cheese Muffins lies in the simple yet essential ingredients that bring together cozy flavors and perfect textures. Each component plays a key role—from the pumpkin puree adding moisture and sweetness, to the pumpkin spice lending those signature autumnal notes, and the cream cheese swirl creating the perfect balance of tang and richness.
- All-purpose flour: Provides structure to the muffins, ensuring they’re tender yet sturdy enough to hold the cream cheese swirl.
- Pumpkin spice: A warm blend of cinnamon, nutmeg, ginger, and cloves that gives these muffins their iconic fall flavor.
- Baking soda: Helps the muffins rise and become light and fluffy.
- Salt: Enhances all the flavors, balancing the sweetness and spices.
- Pumpkin puree: Adds moisture and natural sweetness while keeping the muffins soft and rich.
- Granulated sugar: Sweetens the muffin batter and cream cheese swirl perfectly.
- Brown sugar: Adds a hint of caramel depth and helps maintain moistness.
- Large eggs: Provide structure and richness to the batter.
- Vegetable oil or melted butter: Adds tenderness and keeps the muffins moist.
- Vanilla extract: Enhances the overall sweetness and adds warmth.
- Cream cheese: The star of the swirl, giving a tangy contrast and creamy texture.
- Egg yolk: Enriches the cream cheese mixture, making it silky smooth.
How to Make Pumpkin Cream Cheese Muffins
Step 1: Preheat and Prepare
Start by heating your oven to 375°F and lining your muffin tin with paper baking cups. Setting this up ahead makes scooping the batter and clean-up a breeze. It also ensures your muffins bake evenly without sticking.
Step 2: Combine Dry Ingredients
In a medium bowl, whisk together all-purpose flour, pumpkin spice, baking soda, and salt until perfectly mixed. This blend of dry ingredients forms the foundation of your muffin’s tender crumb and that wonderful fall flavor.
Step 3: Mix Wet Ingredients
Next, in a large bowl, whisk pumpkin puree with granulated sugar and brown sugar until smooth. Add the eggs one at a time, then stir in the vegetable oil and vanilla extract. These wet ingredients bring moisture, flavor, and richness that bake into a cake-like texture.
Step 4: Bring It All Together
Slowly fold in the dry ingredients to the wet mixture, whisking until just combined and lump-free. Overmixing can toughen the muffins, so be gentle here for that perfect tender bite. Scoop the batter into your prepared muffin cups, filling each about three-quarters full to allow room for rising and the cream cheese swirl.
Step 5: Prepare Cream Cheese Swirl
In a separate bowl, beat the cream cheese until smooth and creamy. Add sugar, egg yolk, and vanilla extract, then beat again until fully incorporated and silky. This luscious mix will be dolloped onto each muffin to create that signature swirl.
Step 6: Swirl and Bake
Top each muffin with about a tablespoon of the cream cheese mixture. Using a toothpick or skewer, gently swirl it into the pumpkin batter—don’t worry if it looks uneven; it will bake into a gorgeous marbled design. Bake your muffins for 18 to 20 minutes or until a toothpick inserted into the pumpkin part comes out mostly clean with a few moist crumbs. Let them cool for 10 minutes before digging in or transferring to a wire rack.
How to Serve Pumpkin Cream Cheese Muffins

Garnishes
A simple dusting of powdered sugar adds an elegant touch to these muffins, highlighting the cream cheese swirl and pumpkin color. For extra flair, sprinkle a pinch of cinnamon or chopped pecans on top right before baking to add crunch and aroma.
Side Dishes
Serve your Pumpkin Cream Cheese Muffins alongside a steaming mug of spiced chai, coffee, or creamy hot chocolate for the ultimate cozy combo. They also pair wonderfully with fresh fruit, a scoop of vanilla yogurt, or a drizzle of honey for an elevated breakfast or snack experience.
Creative Ways to Present
For a festive touch, arrange the muffins in a rustic basket lined with a colorful napkin, perfect for holiday gatherings or brunch parties. You can also slice a muffin in half and create a pumpkin cream cheese sandwich by adding a smear of maple butter or your favorite jam for a delightful twist.
Make Ahead and Storage
Storing Leftovers
To keep your Pumpkin Cream Cheese Muffins fresh, store them in an airtight container at room temperature for up to two days. If you need a bit more time, refrigerate for up to a week—but let them come to room temperature before enjoying to preserve that tender crumb.
Freezing
These muffins freeze beautifully! Wrap each muffin tightly in plastic wrap or place them in a freezer-safe bag, then freeze for up to three months. When you want a quick treat, thaw them overnight in the fridge or on the counter for a few hours.
Reheating
Warm your muffins in a microwave for 15 to 20 seconds to revive their softness and bring out the creamy swirl’s richness. For a slight crisp on the outside, reheat them in a toaster oven at 350°F for about 5 minutes.
FAQs
Can I use fresh pumpkin instead of canned pumpkin puree?
Absolutely! Just roast and pureé fresh pumpkin until smooth. Keep in mind fresh pumpkin can contain more water, so you may want to drain excess moisture to maintain the right batter consistency.
Is there a substitute for vegetable oil in this recipe?
You can use melted and cooled butter instead of vegetable oil for a richer flavor. Just be sure it’s fully cooled so it doesn’t cook the eggs when mixed in.
Can I make these muffins gluten-free?
Yes! Swap the all-purpose flour for a gluten-free all-purpose blend, ideally one with xanthan gum included. The texture will be slightly different but still delicious.
How do I prevent the cream cheese swirl from sinking?
The trick is to add the cream cheese swirl last and only gently swirl it into the batter. Overmixing or dropping too much on top can cause it to sink. Dollop and swirl lightly for the best results.
Can these muffins be made vegan?
With some tweaks like using flax eggs, plant-based cream cheese, and a non-dairy milk or oil, you can create a vegan version. The texture and flavor may vary slightly, but they will still be delightful.
Final Thoughts
There’s truly nothing like the warm, comforting flavor of homemade Pumpkin Cream Cheese Muffins to brighten any morning or sweeten an afternoon. They’re easy to make, wonderfully moist, and packed with seasonal charm that feels like a hug in every bite. I can’t wait for you to try this recipe and share these treasured muffins with people you love—they might just become your new fall obsession!
PrintPumpkin Cream Cheese Muffins Recipe
These Pumpkin Cream Cheese Muffins are moist, tender, and bursting with warm pumpkin spice flavors. The creamy, sweet cream cheese swirl adds a delightful contrast, making each bite rich and indulgent. Perfect for fall mornings or a cozy snack.
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Muffin:
- 1 ¾ cups all purpose flour
- 1 tablespoon pumpkin spice
- 1 teaspoon baking soda
- ½ teaspoon salt
- 1 (15 oz) can pumpkin puree
- 1 cup granulated sugar
- ½ cup packed brown sugar
- 2 large eggs
- ½ cup vegetable oil, or melted and cooled butter
- 1 tablespoon vanilla extract
Cream Cheese Swirl:
- 8 oz cream cheese, room temperature
- ¼ cup granulated sugar
- 1 large egg yolk, room temperature
- 2 teaspoons vanilla extract
Instructions
- Preheat and Prepare: Preheat your oven to 375°F (190°C). Line a muffin pan with paper baking cups and set aside to ensure easy removal and cleanup.
- Mix Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, pumpkin spice, baking soda, and salt until evenly combined. This ensures even distribution of leavening and spices throughout the batter.
- Combine Wet Ingredients: In a large bowl, whisk together the pumpkin puree, granulated sugar, and brown sugar until smooth. Beat in the eggs, vegetable oil (or melted butter), and vanilla extract until thoroughly incorporated.
- Add Dry to Wet: Gradually whisk the dry ingredients into the wet mixture, stirring gently until the batter is lump-free but not overmixed, to keep the muffins tender. Fill each muffin cup about ¾ full with the batter.
- Prepare Cream Cheese Swirl: In a separate medium bowl, beat the cream cheese until smooth and creamy. Add the granulated sugar, egg yolk, and vanilla extract, beating until fully combined and silky.
- Swirl Cream Cheese: Spoon about 1 tablespoon of the cream cheese mixture onto the top of each muffin. Use a toothpick or skewer to gently swirl the cream cheese into the pumpkin batter, creating a marbled effect.
- Bake the Muffins: Place the muffin pan in the preheated oven and bake for 18 to 20 minutes. Check doneness by inserting a toothpick into the pumpkin part of a muffin; it should come out clean or with a few moist crumbs.
- Cool and Serve: Let the muffins cool in the pan for 10 minutes before transferring to a wire rack to cool completely. Serve warm or store for later enjoyment.
Notes
- You can substitute pumpkin spice with a mix of cinnamon, nutmeg, ginger, and cloves if desired.
- Using melted butter instead of vegetable oil will add a richer flavor.
- To ensure a smooth cream cheese swirl, make sure the cream cheese and egg yolk are at room temperature before mixing.
- Store muffins in an airtight container at room temperature for up to 3 days or refrigerate for up to a week.
- These muffins also freeze well; thaw overnight in the refrigerator before serving.
Nutrition
- Serving Size: 1 muffin
- Calories: 280
- Sugar: 21g
- Sodium: 210mg
- Fat: 14g
- Saturated Fat: 5g
- Unsaturated Fat: 8g
- Trans Fat: 0g
- Carbohydrates: 32g
- Fiber: 2g
- Protein: 5g
- Cholesterol: 55mg
Keywords: pumpkin muffins, cream cheese muffins, pumpkin spice, fall recipes, breakfast muffins